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Update nextflow_wgs to DSL2 #274
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at this point the enabled processes pass stub runs for |
stubs now also build the paths to the shards.
Co-authored-by: Jakob Willforss <[email protected]>
Co-authored-by: Jakob Willforss <[email protected]>
Co-authored-by: Jakob Willforss <[email protected]>
scout sample load checklist:
|
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Description and reviewer info
Closes #255, fixes #291
The purpose of this PR is to migrate nf_wgs over to DSL2. This does not entail corralling the processes into workflows.
A few processes have been removed, such as the
melt_qc_val
. Annotation only runs will need to be re-added in some future PR.Type of change
Checklist
Major / Minor change
Test/review documentation
Review performed by
Testing performed by